A PTAS for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters

The Consensus Clustering problem has been introduced as an effective way to analyze the results of different microarray experiments [5, 6]. The problem consists of looking for a partition that best summarizes a set of input partitions (each corresponding to a different microarray experiment) under a simple and intuitive cost function. The problem admits polynomial time algorithms on two input partitions, but is APX-hard on three input partitions. We investigate the restriction of Consensus Clustering when the output partition is required to contain at most k sets, giving a polynomial time approximation scheme (PTAS) while proving the NP-hardness of this restriction.